IL_6OT3_143

3D structure

PDB id

6OT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound Release complex 70S at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

6OT3|1|2|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OT3_143 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.1668

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6OT3|1|2|G|933
6OT3|1|2|C|934
6OT3|1|2|A|935
*
6OT3|1|2|U|1380
6OT3|1|2|U|1381
6OT3|1|2|C|1382
6OT3|1|2|C|1383
6OT3|1|2|C|1384

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain l

30S ribosomal protein S7

Chain n

30S ribosomal protein S9