IL_6OTR_015

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OTR_015 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.096

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

6OTR|1|QA|G|371
6OTR|1|QA|C|372
6OTR|1|QA|A|373
6OTR|1|QA|A|374
6OTR|1|QA|U|375
*
6OTR|1|QA|A|389
6OTR|1|QA|C|390

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16