IL_6OTR_052

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OTR_052 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1392

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6OTR|1|QA|C|1303
6OTR|1|QA|G|1304
6OTR|1|QA|G|1305
6OTR|1|QA|A|1306
6OTR|1|QA|U|1307
6OTR|1|QA|U|1308
*
6OTR|1|QA|A|1329
6OTR|1|QA|U|1330
6OTR|1|QA|G|1331
6OTR|1|QA|A|1332
6OTR|1|QA|A|1333
6OTR|1|QA|G|1334

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QM

30S ribosomal protein S13

Chain QU

30S ribosomal protein Thx