IL_6OTR_053

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6OTR|1|QA|C|1400, 6OTR|1|QA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OTR_053 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1808

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6OTR|1|QA|C|1399
6OTR|1|QA|C|1400
6OTR|1|QA|G|1401
*
6OTR|1|QA|C|1501
6OTR|1|QA|A|1502
6OTR|1|QA|A|1503
6OTR|1|QA|G|1504

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QE

30S ribosomal protein S5

Chain QV

Transfer RNA; tRNA

Chain QX

mRNA