IL_6OTR_146

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

6OTR|1|RA|G|2112

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OTR_146 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.3077

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

6OTR|1|RA|G|2110
6OTR|1|RA|C|2111
6OTR|1|RA|G|2112
6OTR|1|RA|U|2113
6OTR|1|RA|A|2114
6OTR|1|RA|G|2115
6OTR|1|RA|G|2116
6OTR|1|RA|A|2117
6OTR|1|RA|U|2118
6OTR|1|RA|A|2119
6OTR|1|RA|G|2120
*
6OTR|1|RA|C|2178
6OTR|1|RA|C|2179

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QW

Transfer RNA; tRNA