IL_6OTR_231
3D structure
- PDB id
- 6OTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- CAC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- 6OTR|1|XA|A|1493
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OTR_231 not in the Motif Atlas
- Geometric match to IL_4RUM_001
- Geometric discrepancy: 0.26
- The information below is about IL_4RUM_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
6OTR|1|XA|C|1407
6OTR|1|XA|A|1408
6OTR|1|XA|C|1409
*
6OTR|1|XA|G|1491
6OTR|1|XA|A|1492
6OTR|1|XA|A|1493
6OTR|1|XA|G|1494
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XL
- 30S ribosomal protein S12
- Chain XX
- mRNA
- Chain XY
- Addiction module toxin, Txe/YoeB family
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: