3D structure

PDB id
6OTR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
Experimental method
X-RAY DIFFRACTION
Resolution
3.12 Å

Loop

Sequence
UUAAG*CGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OTR_253 not in the Motif Atlas
Homologous match to IL_4WF9_019
Geometric discrepancy: 0.1061
The information below is about IL_4WF9_019
Detailed Annotation
AAA cross-strand stack
Broad Annotation
AAA cross-strand stack
Motif group
IL_66798.3
Basepair signature
cWW-L-R-L-R-tHS-cWW
Number of instances in this motif group
7

Unit IDs

6OTR|1|YA|U|606
6OTR|1|YA|U|607
6OTR|1|YA|A|608
6OTR|1|YA|A|609
6OTR|1|YA|G|609|||A
*
6OTR|1|YA|C|618|||A
6OTR|1|YA|G|619
6OTR|1|YA|G|620
6OTR|1|YA|A|621
6OTR|1|YA|G|622

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YF
50S ribosomal protein L4
Chain YP
50S ribosomal protein L15

Coloring options:


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