IL_6OTR_324

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

6OTR|1|YA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OTR_324 not in the Motif Atlas

Homologous match to IL_7RQB_087

Geometric discrepancy: 0.5711

The information below is about IL_7RQB_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OTR|1|YA|C|2129
6OTR|1|YA|U|2130
6OTR|1|YA|G|2131
6OTR|1|YA|U|2132
6OTR|1|YA|G|2133
6OTR|1|YA|A|2134
6OTR|1|YA|A|2135
6OTR|1|YA|C|2136
*
6OTR|1|YA|G|2155
6OTR|1|YA|G|2156
6OTR|1|YA|G|2157
6OTR|1|YA|A|2158
6OTR|1|YA|G|2159

Current chains

Chain YA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA