IL_6OTR_332

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OTR_332 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.1725

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6OTR|1|YA|C|2466
6OTR|1|YA|C|2467
6OTR|1|YA|G|2468
6OTR|1|YA|A|2469
6OTR|1|YA|G|2470
*
6OTR|1|YA|C|2480
6OTR|1|YA|G|2481
6OTR|1|YA|G|2482
6OTR|1|YA|C|2483
6OTR|1|YA|G|2484

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y9

50S ribosomal protein L36

Chain YQ

50S ribosomal protein L16

Chain YZ

50S ribosomal protein L25