IL_6OTR_361
3D structure
- PDB id
- 6OTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- GGAACUCUG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OTR_361 not in the Motif Atlas
- Homologous match to IL_7A0S_109
- Geometric discrepancy: 0.0949
- The information below is about IL_7A0S_109
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.1
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
6OTR|1|YA|G|1666
6OTR|1|YA|G|1667
6OTR|1|YA|A|1668
6OTR|1|YA|A|1669
6OTR|1|YA|C|1670
6OTR|1|YA|U|1671
6OTR|1|YA|C|1672
6OTR|1|YA|U|1673
6OTR|1|YA|G|1674
*
6OTR|1|YA|C|1990
6OTR|1|YA|U|1991
6OTR|1|YA|G|1992
6OTR|1|YA|U|1993
6OTR|1|YA|C|1994
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YE
- 50S ribosomal protein L3
- Chain YO
- 50S ribosomal protein L14
Coloring options: