3D structure

PDB id
6OUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF2 accommodated state bound 70S complex at long incubation time
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CCCAGACAG*UCGAG
Length
14 nucleotides
Bulged bases
6OUO|1|1|A|1046
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OUO_039 not in the Motif Atlas
Homologous match to IL_5J7L_284
Geometric discrepancy: 0.1649
The information below is about IL_5J7L_284
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_99692.2
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

6OUO|1|1|C|1043
6OUO|1|1|C|1044
6OUO|1|1|C|1045
6OUO|1|1|A|1046
6OUO|1|1|G|1047
6OUO|1|1|A|1048
6OUO|1|1|C|1049
6OUO|1|1|A|1050
6OUO|1|1|G|1051
*
6OUO|1|1|U|1108
6OUO|1|1|C|1109
6OUO|1|1|G|1110
6OUO|1|1|A|1111
6OUO|1|1|G|1112

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain F
50S ribosomal protein L6
Chain f
50S ribosomal protein L36

Coloring options:


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