IL_6OUO_118

3D structure

PDB id

6OUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound 70S complex at long incubation time

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

6OUO|1|2|U|244, 6OUO|1|2|C|280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OUO_118 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1339

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6OUO|1|2|G|242
6OUO|1|2|A|243
6OUO|1|2|U|244
6OUO|1|2|U|245
6OUO|1|2|A|246
6OUO|1|2|G|247
*
6OUO|1|2|C|277
6OUO|1|2|G|278
6OUO|1|2|A|279
6OUO|1|2|C|280
6OUO|1|2|G|281
6OUO|1|2|A|282
6OUO|1|2|U|283
6OUO|1|2|C|284

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain v

30S ribosomal protein S17