IL_6OXA_009

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

6OXA|1|QA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_009 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.1008

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

6OXA|1|QA|G|148
6OXA|1|QA|A|149
6OXA|1|QA|C|150
6OXA|1|QA|A|151
6OXA|1|QA|A|152
6OXA|1|QA|C|153
*
6OXA|1|QA|G|168
6OXA|1|QA|C|169
6OXA|1|QA|U|170
6OXA|1|QA|A|171
6OXA|1|QA|A|172
6OXA|1|QA|U|173
6OXA|1|QA|C|174

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20