IL_6OXA_013

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GG*UGGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_013 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.127

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

6OXA|1|QA|G|292
6OXA|1|QA|G|293
*
6OXA|1|QA|U|304
6OXA|1|QA|G|305
6OXA|1|QA|G|306
6OXA|1|QA|C|307
6OXA|1|QA|C|308

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16