IL_6OXA_023
3D structure
- PDB id
- 6OXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- UGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OXA_023 not in the Motif Atlas
- Homologous match to IL_6CZR_135
- Geometric discrepancy: 0.1164
- The information below is about IL_6CZR_135
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.6
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
6OXA|1|QA|U|580
6OXA|1|QA|G|581
6OXA|1|QA|U|582
6OXA|1|QA|A|583
6OXA|1|QA|G|584
*
6OXA|1|QA|U|757
6OXA|1|QA|G|758
6OXA|1|QA|A|759
6OXA|1|QA|G|760
6OXA|1|QA|G|761
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QL
- 30S ribosomal protein S12
- Chain QO
- 30S ribosomal protein S15
- Chain QQ
- 30S ribosomal protein S17
- Chain RA
- Large subunit ribosomal RNA; LSU rRNA
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