IL_6OXA_072

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

6OXA|1|RA|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_072 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.1598

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6OXA|1|RA|C|280
6OXA|1|RA|G|281
6OXA|1|RA|A|282
6OXA|1|RA|A|283
6OXA|1|RA|U|284
*
6OXA|1|RA|A|357
6OXA|1|RA|U|358
6OXA|1|RA|A|359
6OXA|1|RA|G|360

Current chains

Chain RA

23S rRNA

Nearby chains