IL_6OXA_082

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_082 not in the Motif Atlas

Homologous match to IL_5J7L_263

Geometric discrepancy: 0.0864

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6OXA|1|RA|U|703
6OXA|1|RA|G|704
6OXA|1|RA|A|705
6OXA|1|RA|A|706
6OXA|1|RA|G|707
*
6OXA|1|RA|U|724
6OXA|1|RA|G|725
6OXA|1|RA|G|726
6OXA|1|RA|A|727
6OXA|1|RA|G|728

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2