IL_6OXA_134

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_134 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1641

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6OXA|1|RA|U|1851
6OXA|1|RA|C|1852
6OXA|1|RA|A|1853
6OXA|1|RA|A|1854
6OXA|1|RA|G|1855
*
6OXA|1|RA|C|1887
6OXA|1|RA|G|1888
6OXA|1|RA|A|1889
6OXA|1|RA|A|1890
6OXA|1|RA|G|1891

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QW

Transfer RNA; tRNA

Chain R1

50S ribosomal protein L28

Chain RD

50S ribosomal protein L2