IL_6OXA_142

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

6OXA|1|RA|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_142 not in the Motif Atlas

Homologous match to IL_7RQB_082

Geometric discrepancy: 0.0915

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6OXA|1|RA|C|2081
6OXA|1|RA|A|2082
6OXA|1|RA|G|2083
*
6OXA|1|RA|C|2236
6OXA|1|RA|G|2237
6OXA|1|RA|G|2238
6OXA|1|RA|G|2239

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QW

Transfer RNA; tRNA

Chain R1

50S ribosomal protein L28

Chain RD

50S ribosomal protein L2