IL_6OXA_157

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6OXA|1|RA|G|2576, 6OXA|1|RA|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_157 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.1034

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6OXA|1|RA|C|2510
6OXA|1|RA|U|2511
6OXA|1|RA|C|2512
*
6OXA|1|RA|G|2574
6OXA|1|RA|C|2575
6OXA|1|RA|G|2576
6OXA|1|RA|A|2577
6OXA|1|RA|G|2578

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R5

50S ribosomal protein L32

Chain RE

50S ribosomal protein L3