IL_6OXA_161

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

6OXA|1|RA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_161 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1078

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6OXA|1|RA|U|2636
6OXA|1|RA|U|2637
6OXA|1|RA|G|2638
6OXA|1|RA|A|2639
6OXA|1|RA|G|2640
*
6OXA|1|RA|C|2774
6OXA|1|RA|A|2775
6OXA|1|RA|A|2776
6OXA|1|RA|G|2777
6OXA|1|RA|A|2778
6OXA|1|RA|U|2779
6OXA|1|RA|G|2780
6OXA|1|RA|A|2781
6OXA|1|RA|G|2782

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RN

50S ribosomal protein L13