IL_6OXA_169

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_169 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.1829

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

6OXA|1|RA|U|2847
6OXA|1|RA|G|2848
6OXA|1|RA|U|2849
6OXA|1|RA|A|2850
6OXA|1|RA|A|2851
6OXA|1|RA|G|2852
*
6OXA|1|RA|U|2865
6OXA|1|RA|U|2866
6OXA|1|RA|G|2867
6OXA|1|RA|A|2868
6OXA|1|RA|G|2869

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RR

50S ribosomal protein L17

Chain RT

50S ribosomal protein L19