IL_6OXA_185

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

6OXA|1|XA|U|244, 6OXA|1|XA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_185 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.1051

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6OXA|1|XA|C|242
6OXA|1|XA|A|243
6OXA|1|XA|U|244
6OXA|1|XA|C|245
6OXA|1|XA|A|246
6OXA|1|XA|G|247
*
6OXA|1|XA|C|277
6OXA|1|XA|G|278
6OXA|1|XA|A|279
6OXA|1|XA|C|280
6OXA|1|XA|G|281
6OXA|1|XA|A|282
6OXA|1|XA|C|283
6OXA|1|XA|G|284

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17