IL_6OXA_193

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_193 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.0937

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6OXA|1|XA|G|450
6OXA|1|XA|A|451
6OXA|1|XA|A|452
6OXA|1|XA|A|453
6OXA|1|XA|C|454
6OXA|1|XA|C|455
*
6OXA|1|XA|G|477
6OXA|1|XA|A|478
6OXA|1|XA|C|479
6OXA|1|XA|U|480
6OXA|1|XA|G|481
6OXA|1|XA|A|482
6OXA|1|XA|C|483

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16