IL_6OXA_207

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_207 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0956

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6OXA|1|XA|C|779
6OXA|1|XA|A|780
6OXA|1|XA|A|781
6OXA|1|XA|A|782
6OXA|1|XA|C|783
*
6OXA|1|XA|G|799
6OXA|1|XA|G|800
6OXA|1|XA|U|801
6OXA|1|XA|A|802
6OXA|1|XA|G|803

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XK

30S ribosomal protein S11

Chain YA

Large subunit ribosomal RNA; LSU rRNA