IL_6OXA_225

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_225 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1278

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6OXA|1|XA|C|1303
6OXA|1|XA|G|1304
6OXA|1|XA|G|1305
6OXA|1|XA|A|1306
6OXA|1|XA|U|1307
6OXA|1|XA|U|1308
*
6OXA|1|XA|A|1329
6OXA|1|XA|U|1330
6OXA|1|XA|G|1331
6OXA|1|XA|A|1332
6OXA|1|XA|A|1333
6OXA|1|XA|G|1334

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XM

30S ribosomal protein S13

Chain XU

30S ribosomal protein Thx