IL_6OXA_248
3D structure
- PDB id
- 6OXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GAAC*GAGUGAAAUAGAGC
- Length
- 18 nucleotides
- Bulged bases
- 6OXA|1|YA|U|504, 6OXA|1|YA|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OXA_248 not in the Motif Atlas
- Geometric match to IL_7RQB_014
- Geometric discrepancy: 0.0763
- The information below is about IL_7RQB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.6
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
6OXA|1|YA|G|481
6OXA|1|YA|A|482
6OXA|1|YA|A|483
6OXA|1|YA|C|484
*
6OXA|1|YA|G|496
6OXA|1|YA|A|497
6OXA|1|YA|G|498
6OXA|1|YA|U|499
6OXA|1|YA|G|500
6OXA|1|YA|A|501
6OXA|1|YA|A|502
6OXA|1|YA|A|503
6OXA|1|YA|U|504
6OXA|1|YA|A|505
6OXA|1|YA|G|506
6OXA|1|YA|A|507
6OXA|1|YA|G|508
6OXA|1|YA|C|509
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YW
- 50S ribosomal protein L22
- Chain YX
- 50S ribosomal protein L23
- Chain YY
- 50S ribosomal protein L24
Coloring options: