3D structure

PDB id
6OXA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)
Experimental method
X-RAY DIFFRACTION
Resolution
3.25 Å

Loop

Sequence
CGAUGAAG*UGGAG
Length
13 nucleotides
Bulged bases
6OXA|1|YA|U|1211
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OXA_281 not in the Motif Atlas
Homologous match to IL_7RQB_047
Geometric discrepancy: 0.1252
The information below is about IL_7RQB_047
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.2
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
28

Unit IDs

6OXA|1|YA|C|1208
6OXA|1|YA|G|1209
6OXA|1|YA|A|1210
6OXA|1|YA|U|1211
6OXA|1|YA|G|1212
6OXA|1|YA|A|1213
6OXA|1|YA|A|1214
6OXA|1|YA|G|1215
*
6OXA|1|YA|U|1234
6OXA|1|YA|G|1235
6OXA|1|YA|G|1236
6OXA|1|YA|A|1237
6OXA|1|YA|G|1238

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YU
50S ribosomal protein L20

Coloring options:


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