IL_6OXA_287
3D structure
- PDB id
- 6OXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- UGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OXA_287 not in the Motif Atlas
- Homologous match to IL_7RQB_053
- Geometric discrepancy: 0.181
- The information below is about IL_7RQB_053
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
6OXA|1|YA|U|1357
6OXA|1|YA|G|1358
6OXA|1|YA|A|1359
6OXA|1|YA|A|1360
6OXA|1|YA|G|1361
*
6OXA|1|YA|C|1370
6OXA|1|YA|G|1371
6OXA|1|YA|U|1372
6OXA|1|YA|A|1373
6OXA|1|YA|G|1374
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y1
- 50S ribosomal protein L28
- Chain Y7
- 50S ribosomal protein L34
- Chain YD
- 50S ribosomal protein L2
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