IL_6OXA_291

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUAG*CGAAG

Length

9 nucleotides

Bulged bases

6OXA|1|YA|A|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_291 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.0805

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6OXA|1|YA|C|1437
6OXA|1|YA|U|1438
6OXA|1|YA|A|1439
6OXA|1|YA|G|1440
*
6OXA|1|YA|C|1551
6OXA|1|YA|G|1552
6OXA|1|YA|A|1553
6OXA|1|YA|A|1554
6OXA|1|YA|G|1555

Current chains

Chain YA

23S rRNA

Nearby chains