IL_6OXA_301

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

6OXA|1|YA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_301 not in the Motif Atlas

Geometric match to IL_7A0S_062

Geometric discrepancy: 0.1182

The information below is about IL_7A0S_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

6OXA|1|YA|A|1669
6OXA|1|YA|C|1670
6OXA|1|YA|U|1671
6OXA|1|YA|C|1672
6OXA|1|YA|U|1673
6OXA|1|YA|G|1674
*
6OXA|1|YA|C|1990
6OXA|1|YA|U|1991
6OXA|1|YA|G|1992
6OXA|1|YA|U|1993

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L3

Chain YO

50S ribosomal protein L14