IL_6OXA_306

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UG*UGAA

Length

6 nucleotides

Bulged bases

6OXA|1|YA|G|1899, 6OXA|1|YA|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_306 not in the Motif Atlas

Homologous match to IL_7RQB_072

Geometric discrepancy: 0.1349

The information below is about IL_7RQB_072

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_16396.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6OXA|1|YA|U|1841
6OXA|1|YA|G|1842
*
6OXA|1|YA|U|1898
6OXA|1|YA|G|1899
6OXA|1|YA|A|1900
6OXA|1|YA|A|1901

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XA

Small subunit ribosomal RNA; SSU rRNA

Chain YD

50S ribosomal protein L2