IL_6OXA_311
3D structure
- PDB id
- 6OXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 6OXA|1|YA|A|1938, 6OXA|1|YA|U|1944, 6OXA|1|YA|U|1963
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OXA_311 not in the Motif Atlas
- Homologous match to IL_4WF9_077
- Geometric discrepancy: 0.1126
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.1
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 8
Unit IDs
6OXA|1|YA|C|1934
6OXA|1|YA|G|1935
6OXA|1|YA|A|1936
6OXA|1|YA|A|1937
6OXA|1|YA|A|1938
6OXA|1|YA|U|1939
6OXA|1|YA|U|1940
6OXA|1|YA|C|1941
6OXA|1|YA|C|1942
6OXA|1|YA|U|1943
6OXA|1|YA|U|1944
6OXA|1|YA|G|1945
*
6OXA|1|YA|C|1961
6OXA|1|YA|C|1962
6OXA|1|YA|U|1963
6OXA|1|YA|G|1964
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain YD
- 50S ribosomal protein L2
Coloring options: