IL_6OXA_350

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGAAU*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_350 not in the Motif Atlas

Homologous match to IL_5J7L_361

Geometric discrepancy: 0.1006

The information below is about IL_5J7L_361

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6OXA|1|QA|G|673
6OXA|1|QA|G|674
6OXA|1|QA|A|675
6OXA|1|QA|A|676
6OXA|1|QA|U|677
*
6OXA|1|QA|G|713
6OXA|1|QA|G|714
6OXA|1|QA|A|715
6OXA|1|QA|A|716
6OXA|1|QA|C|717

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QF

30S ribosomal protein S6

Chain QK

30S ribosomal protein S11

Chain QR

30S ribosomal protein S18

Chain RD

50S ribosomal protein L2