IL_6OXA_357
3D structure
- PDB id
- 6OXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- CGCUGAC*GGUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 6OXA|1|YA|G|932
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OXA_357 not in the Motif Atlas
- Homologous match to IL_9DFE_024
- Geometric discrepancy: 0.1586
- The information below is about IL_9DFE_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_68243.1
- Basepair signature
- cWW-L-cWW-cWW-R-L-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
6OXA|1|YA|C|844
6OXA|1|YA|G|845
6OXA|1|YA|C|846
6OXA|1|YA|U|847
6OXA|1|YA|G|848
6OXA|1|YA|A|849
6OXA|1|YA|C|850
*
6OXA|1|YA|G|928
6OXA|1|YA|G|929
6OXA|1|YA|U|930
6OXA|1|YA|G|931
6OXA|1|YA|G|932
6OXA|1|YA|A|933
6OXA|1|YA|G|934
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y3
- 50S ribosomal protein L30
Coloring options: