IL_6OXI_030
3D structure
- PDB id
- 6OXI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.49 Å
Loop
- Sequence
- GGAAUU*AGGAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OXI_030 not in the Motif Atlas
- Geometric match to IL_4LFB_030
- Geometric discrepancy: 0.0999
- The information below is about IL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
6OXI|1|QA|G|673
6OXI|1|QA|G|674
6OXI|1|QA|A|675
6OXI|1|QA|A|676
6OXI|1|QA|U|677
6OXI|1|QA|U|678
*
6OXI|1|QA|A|712
6OXI|1|QA|G|713
6OXI|1|QA|G|714
6OXI|1|QA|A|715
6OXI|1|QA|A|716
6OXI|1|QA|C|717
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QF
- 30S ribosomal protein S6
- Chain QK
- 30S ribosomal protein S11
- Chain QR
- 30S ribosomal protein S18
- Chain RD
- 50S ribosomal protein L2
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