IL_6OXI_093

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

UAG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXI_093 not in the Motif Atlas

Geometric match to IL_7RQB_032

Geometric discrepancy: 0.2108

The information below is about IL_7RQB_032

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_80097.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6OXI|1|RA|U|877
6OXI|1|RA|A|878
6OXI|1|RA|G|879
*
6OXI|1|RA|C|898
6OXI|1|RA|A|899

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RQ

50S ribosomal protein L16

Chain RZ

50S ribosomal protein L25