IL_6OXI_157
3D structure
- PDB id
- 6OXI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.49 Å
Loop
- Sequence
- CCGAG*CGGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OXI_157 not in the Motif Atlas
- Homologous match to IL_7A0S_087
- Geometric discrepancy: 0.1973
- The information below is about IL_7A0S_087
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
6OXI|1|RA|C|2466
6OXI|1|RA|C|2467
6OXI|1|RA|G|2468
6OXI|1|RA|A|2469
6OXI|1|RA|G|2470
*
6OXI|1|RA|C|2480
6OXI|1|RA|G|2481
6OXI|1|RA|G|2482
6OXI|1|RA|C|2483
6OXI|1|RA|G|2484
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R9
- 50S ribosomal protein L36
- Chain RQ
- 50S ribosomal protein L16
Coloring options: