IL_6OXI_246

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

GCGUG*CC

Length

7 nucleotides

Bulged bases

6OXI|1|YA|U|271|||C

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXI_246 not in the Motif Atlas

Geometric match to IL_7Q82_001

Geometric discrepancy: 0.11

The information below is about IL_7Q82_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6OXI|1|YA|G|271
6OXI|1|YA|C|271|||A
6OXI|1|YA|G|271|||B
6OXI|1|YA|U|271|||C
6OXI|1|YA|G|272
*
6OXI|1|YA|C|365
6OXI|1|YA|C|366

Current chains

Chain YA

23S rRNA

Nearby chains