IL_6OXI_282

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6OXI|1|YA|A|1088, 6OXI|1|YA|G|1089

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXI_282 not in the Motif Atlas

Geometric match to IL_5B2P_002

Geometric discrepancy: 0.2678

The information below is about IL_5B2P_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

6OXI|1|YA|G|1087
6OXI|1|YA|A|1088
6OXI|1|YA|G|1089
6OXI|1|YA|U|1090
6OXI|1|YA|G|1091
*
6OXI|1|YA|C|1100
6OXI|1|YA|U|1101
6OXI|1|YA|C|1102

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y9

50S ribosomal protein L36