IL_6OXI_359

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

UGUAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXI_359 not in the Motif Atlas

Homologous match to IL_9DFE_026

Geometric discrepancy: 0.0978

The information below is about IL_9DFE_026

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_38862.5

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6OXI|1|RA|U|858
6OXI|1|RA|G|859
6OXI|1|RA|U|860
6OXI|1|RA|A|861
6OXI|1|RA|G|862
*
6OXI|1|RA|C|915
6OXI|1|RA|G|916
6OXI|1|RA|A|917
6OXI|1|RA|A|918
6OXI|1|RA|G|919

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R0

50S ribosomal protein L27

Chain RB

5S ribosomal RNA; 5S rRNA

Chain RQ

50S ribosomal protein L16