IL_6OXI_369

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

CCCC*GGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXI_369 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3212

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6OXI|1|XA|C|1027
6OXI|1|XA|C|1028
6OXI|1|XA|C|1028|||A
6OXI|1|XA|C|1028|||B
*
6OXI|1|XA|G|1032|||B
6OXI|1|XA|G|1033
6OXI|1|XA|G|1034

Current chains

Chain XA

16S rRNA

Nearby chains