IL_6P4G_005

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

6P4G|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4G_005 not in the Motif Atlas

Homologous match to IL_4V88_387

Geometric discrepancy: 0.0958

The information below is about IL_4V88_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77761.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6P4G|1|2|G|41
6P4G|1|2|A|42
6P4G|1|2|U|43
6P4G|1|2|U|44
6P4G|1|2|A|45
6P4G|1|2|A|46
6P4G|1|2|G|47
*
6P4G|1|2|C|479
6P4G|1|2|G|480
6P4G|1|2|C|481

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12