IL_6P4G_032

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4G_032 not in the Motif Atlas

Geometric match to IL_6JDV_001

Geometric discrepancy: 0.2739

The information below is about IL_6JDV_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

6P4G|1|2|U|566
6P4G|1|2|C|567
6P4G|1|2|C|568
6P4G|1|2|A|569
*
6P4G|1|2|U|581
6P4G|1|2|U|582
6P4G|1|2|A|583
6P4G|1|2|A|584

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Z

eS24