IL_6P4G_042

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAAAAUU*ACCGCAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4G_042 not in the Motif Atlas

Homologous match to IL_4V88_425

Geometric discrepancy: 0.2522

The information below is about IL_4V88_425

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53064.1

Basepair signature

cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6P4G|1|2|G|807
6P4G|1|2|A|808
6P4G|1|2|A|809
6P4G|1|2|A|810
6P4G|1|2|A|811
6P4G|1|2|A|812
6P4G|1|2|A|813
6P4G|1|2|U|814
6P4G|1|2|U|815
*
6P4G|1|2|A|849
6P4G|1|2|C|850
6P4G|1|2|C|851
6P4G|1|2|G|852
6P4G|1|2|C|853
6P4G|1|2|A|854
6P4G|1|2|G|855
6P4G|1|2|C|856

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain K

uS4

Chain M

uS17

Chain X

uS8