IL_6P4G_046

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

6P4G|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4G_046 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.2253

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6P4G|1|2|G|925
6P4G|1|2|A|926
6P4G|1|2|C|927
*
6P4G|1|2|G|1014
6P4G|1|2|U|1015
6P4G|1|2|U|1016
6P4G|1|2|U|1017

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

uS15

Chain c

eS27