IL_6P4H_016

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6P4H|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4H_016 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1122

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6P4H|1|2|G|145
6P4H|1|2|G|146
6P4H|1|2|A|147
6P4H|1|2|U|148
6P4H|1|2|A|149
6P4H|1|2|A|150
6P4H|1|2|C|151
*
6P4H|1|2|G|167
6P4H|1|2|C|168
6P4H|1|2|U|169
6P4H|1|2|A|170
6P4H|1|2|A|171
6P4H|1|2|U|172
6P4H|1|2|A|173
6P4H|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

eS24