IL_6P4H_025

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6P4H|1|2|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4H_025 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1443

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6P4H|1|2|G|411
6P4H|1|2|G|412
6P4H|1|2|G|413
*
6P4H|1|2|C|424
6P4H|1|2|G|425
6P4H|1|2|A|426
6P4H|1|2|U|427
6P4H|1|2|U|428
6P4H|1|2|C|429

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain K

uS4

Chain Y

uS12