IL_6P4H_037

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6P4H|1|2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4H_037 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1167

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

6P4H|1|2|G|665
6P4H|1|2|U|666
6P4H|1|2|U|667
6P4H|1|2|A|668
6P4H|1|2|A|669
6P4H|1|2|A|670
6P4H|1|2|A|671
*
6P4H|1|2|U|1161
6P4H|1|2|C|1162

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5

Chain Y

uS12

Chain b

eS26