IL_6P4H_040

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4H_040 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2195

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6P4H|1|2|G|692
6P4H|1|2|A|693
6P4H|1|2|G|694
6P4H|1|2|C|695
*
6P4H|1|2|G|731
6P4H|1|2|U|732
6P4H|1|2|C|733
6P4H|1|2|C|734

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

eS7

Chain X

uS8